High performance computingimage use case Namd

NAMD is a high-performance molecular dynamics software specifically designed to simulate very large biomolecular systems. It excels with its exceptional scalability, allowing efficient use of hundreds or thousands of cores. Installed on a dedicated server, it benefits from an optimised and non-shared hardware environment, ideal for demanding distributed calculations. This configuration ensures faster, more stable simulations that are perfectly suited to advanced modelling needs.

Servers tested by experts and recommended for workloads on Drupal

4.9

Namd-Adapted Score

Minimal

SCALE-a5

$708.00

/month

or $849.60 incl. VAT/month

Setup fee: $708.00

Order

Processor: AMD EPYC 9555

Cores / Threads: 64c / 128t

Frequency: 3.2GHz / 4.4GHz

RAM: 128GB DDR5 ECC 4800MHz

4.8

Namd-Adapted Score

Recommended

HGR-HCI-i4

$1,206.99

/month

or $1,448.39 incl. VAT/month

Setup fee: $1,207.00

Order

Processor: Intel Xeon Gold 6554S

Cores / Threads: 36c / 72t

Frequency: 2.2GHz / 3GHz

RAM: 256GB DDR5 ECC 4800MHz

4.2

Namd-Adapted Score

Better

SCALE-a4

$638.00

/month

or $765.60 incl. VAT/month

Setup fee: $638.00

Order

Processor: AMD EPYC 9455

Cores / Threads: 48c / 96t

Frequency: 3.15GHz / 4.4GHz

RAM: 128GB DDR5 ECC 4800MHz

4.2

Namd-Adapted Score

Best

HGR-HCI-a2

$1,273.99

/month

or $1,528.79 incl. VAT/month

Setup fee: $1,274.00

Order

Processor: AMD Epyc 9354

Cores / Threads: 32c / 64t

Frequency: 3.25GHz / 3.8GHz

RAM: 384GB DDR5 ECC 4800MHz

NAMD
NAMD

4.9

Namd-Adapted Score

Minimal

SCALE-a5

$708.00

/month

or $849.60 incl. VAT/month

Setup fee: $708.00

Order

Processor: AMD EPYC 9555

Cores / Threads: 64c / 128t

Frequency: 3.2GHz / 4.4GHz

RAM: 128GB DDR5 ECC 4800MHz

4.8

Namd-Adapted Score

Recommended

HGR-HCI-i4

$1,206.99

/month

or $1,448.39 incl. VAT/month

Setup fee: $1,207.00

Order

Processor: Intel Xeon Gold 6554S

Cores / Threads: 36c / 72t

Frequency: 2.2GHz / 3GHz

RAM: 256GB DDR5 ECC 4800MHz

4.2

Namd-Adapted Score

Better

SCALE-a4

$638.00

/month

or $765.60 incl. VAT/month

Setup fee: $638.00

Order

Processor: AMD EPYC 9455

Cores / Threads: 48c / 96t

Frequency: 3.15GHz / 4.4GHz

RAM: 128GB DDR5 ECC 4800MHz

4.2

Namd-Adapted Score

Best

HGR-HCI-a2

$1,273.99

/month

or $1,528.79 incl. VAT/month

Setup fee: $1,274.00

Order

Processor: AMD Epyc 9354

Cores / Threads: 32c / 64t

Frequency: 3.25GHz / 3.8GHz

RAM: 384GB DDR5 ECC 4800MHz

Metric

MetricMinimum RequirementBest Requirement
NAMD
111
NAMD
03

Weighting of metrics in the score calculation

Adapted Score
NAMD50.00%
NAMD50.00%
NAMD50.00%
NAMD50.00%

Score scale from 0 to 5 to evaluate server adequacy

5.04.33.40
Ideal zone

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